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Brede Toolbox
IMM, Techical University of Denmark
"Brede" is a neuroinformatics toolbox primarily written in the Matlab language running under matlab 6.0 or later. Its primary purposes are handling, analyzing and visualizing data from functional neuroimaging experiments, - not the original data but rather the summary images (e.g., statistical parametric images) and location data in stereotactic space. It includes Corner Cube visualization, VRML97 generation, text and link analysis, and probabilistic modeling of activation foci (a la Peter T. Fox's "functional volumes modeling").
NIfTI-1 support
Finn Årup Nielsen
Free for noncommericial use
How to get
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Current version
Current version release date
Open source
Special license by Technical University of Denmark
Available free of charge
Matlab 6.0
Technical publications
Finn Årup Nielsen, Lars Kai Hansen, (2000, February), Experiences with Matlab and VRML in Functional Neuroimaging Visualizations, In Visualization Development Environments (VDE2000), Princeton Plasma Physics Laboratory, Princeton, New Jersey, USA, 2000 April 27-28.
Finn Årup Nielsen, Lars Kai Hansen, Modeling of activation data in the BrainMap(TM): Detection of outliers, Human Brain Mapping, 15(3): 146-156, 2002 March.
Finn Årup Nielsen, Lars Kai Hansen, Finding related functional neuroimaging volumes
Artificial Intelligence in Medicine, 30(2):141-51, 2004 February. Submitted 2002 September 13.
Finn Årup Nielsen, Daniela Balslev, Lars Kai Hansen,
Mining the posterior cingulate: Segregation between memory and pain components,
NeuroImage, 27(3):520-532, 2005.
Finn Årup Nielsen, Lars Kai Hansen, Daniela Balslev,
Mining for associations between text and brain activation in a functional neuroimaging database
Neuroinformatics, 2(4):369-380, 2004 Winter.
Finn Årup Nielsen,
Mass meta-analysis in Talairach space,
Neural Information Processing Systems conference
Finn Årup Nielsen, Andrew C. N. Chen, Lars Kai Hansen,
Testing for difference between two groups of functional neuroimaging experiments,
Den 13. Danske Konference i Mønstergenkendelse og Billedanalyse, 2004 August 19-20.

Applications publications
Other information
atlas, functional, statistical, visualization, volume
IATR listing last updated
21 Sep 2005