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Name
CellProfiler cell image analysis software
Byline
Broad Institute of Harvard and MIT
Description
CellProfiler cell image analysis software is free and open-source software designed for biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically. It counts cells but also measures the size, shape, intensity and texture of every cell (and every labeled subcellular compartment) in every image. It was designed for high-throughput screening but can perform automated image analysis for images from time-lapse movies and low-throughput experiments. It contains several modules to identify and measure properties of neurites.
NIfTI-1 support
no plans.
Creator
Anne E. Carpenter and Thouis Ray Jones
Contact
imagingadmin@broadinstitute.org
WWW
www.cellprofiler.org
Availability
free and open-source
How to get
download from www.cellprofiler.org
Current version
Current version release date
2011
Open source
Yes
License
GPL v.2
Available free of charge
Yes
Requirements
Technical publications
see http://cellprofiler.org/citations.shtml for up-to-date publications describing CellProfiler.
Applications publications
see http://cellprofiler.org/CP_citers.shtml for up-to-date publications using CellProfiler.
Other information
Keywords
microscopy, neurite measurement, neuron measurement, segmentation
Platforms
Linux, MacOS, MATLAB, UNIX, Windows
IATR listing last updated
21 Mar 2011