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Name
DiatrackPro 3.04
Byline
Powerful particle tracking
Description
Object segmentation and tracking software for 2D and 3D applications, such as biological imaging, rheology, or single molecule imaging. Reliably follow and characterize thousands of objects simultaneously with a precision better than 0.01 pixels. DiaTrack provides a large number of tools to extract quantitative information from image sequences.
NIfTI-1 support
N.A.
Creator
Pascal Vallotton
Contact
pascal_vallotton@hotmail.com
WWW
diatrack.org
Availability
Full-featured, free software
How to get
download from http://www.diatrack.org/contact.html
Current version
3.04
Current version release date
20.08.20014
Open source
No
License
free, as in beer
Available free of charge
Yes
Requirements
Windows, 64 bit (win64). The required libraries from Matlab will be downloaded and installed automatically by setup.
Technical publications
Vallotton P. Quantitative analysis of time-lapse sequences. Bioworld 1-2004. Vallotton P., Ponti A., Salmon E.D., Waterman-Storer C., and Danuser G. Recovery, visualization, and analysis of actin and tubulin polymer flow in live cells: A fluorescent Speckle Microscopy study. Biophys. J. 2003, 85:1289-306 Vallotton P, Gupton SL, Waterman-Storer CM, Danuser G. Simultaneous mapping of filamentous actin flow and turnover in migrating cells by quantitative fluorescent Speckle Microscopy. PNAS 2004, jun 21. Vallotton P, Danuser G, Bohnet S, Meister JJ, Verkhovsky AB.Tracking retrograde flow in keratocytes: news from the front. Mol Biol Cell. 2005 Mar;16(3):1223-31
Applications publications
Siebrasse Jp et al. Single-molecule tracking in eukaryotic cell nuclei. Anal Bioanal Chem. 2007 Jan;387(1):41-4 Grunwald D et al. Intranuclear binding kinetics and mobility of single native U1 snRNP particles in living cells. Mol Biol Cell. 2006 Dec;17(12):5017-27 Combier JP et al. MtHAP2-1 is a key transcriptional regulator of symbiotic nodule development regulated by microRNA169 in Medicago truncatula. Genes Dev. 2006 Nov 15;20(22):3084-8 del Toro D et al. Mutant huntingtin impairs the post-Golgi trafficking of brain-derived neurotrophic factor but not its Val66Met polymorphism. J Neurosci. 2006 Dec 6;26(49):12748-57 Kim JH et al. Single-molecule analysis of 1D diffusion and transcription elongation of T7 RNA polymerase along individual stretched DNA molecules. Nucleic Acids Res. 2007;35(11):3848-58 Peng W. et al. Reverse-flow centrifugal separators in parallel: Performance and flow pattern. AIChE Journal. 53(3);589-597 Kaitna R. et al. Experimental study on rheologic behaviour of debris flow material. Acta Geotechnica. 2007; 2(2):71-85 Kim H et al. Microtubule binding by dynactin is required for microtubule organization but not cargo transport. J Cell Biol. 2007 Feb 26;176(5):641-51 Li H. et al. Surface acoustic wave concentration of particle and bioparticle suspensions. Biomedical Microdevices. 2007 May 26 Shuo-Chien Ling , Peter S. Fahrner , William T. Greenough , Vladimir I. Gelfand. Transport of Drosophila fragile X mental retardation protein-containing ribonucleoprotein granules by kinesin-1 and cytoplasmic dynein, PNAS 2004; 101: 17428-17433 Deacon SW, Nascimento A, Serpinskaya AS, Gelfand VI. Regulation of Bidirectional Melanosome Transport by Organelle Bound MAP Kinase. Curr Biol. 2005 Mar 8;15(5):459-63. Trelles-Sticken E, Adelfalk C, Loidl J, Scherthan H. Meiotic telomere clustering requires actin for its formation and cohesin for its resolution. J Cell Biol. 2005 Jul 18;170(2):213-23. Traffic. 2007 Jul;8(7):867-82. Rab18 inhibits secretory activity in neuroendocrine cells by interacting with secretory granules
Other information
Please, cite the following paper if you find Diatrack useful for your research: Vallotton, P., and Olivier, S. Tri-track: Free Software for Large-Scale Particle Tracking. Microscopy and Microanalysis. 2013, 19: 451-460.
Keywords
fluorescence, microscopy, motion, movies, object tracking, segmentation, statistical, time-lapse, tracking, trajectory, visualization, volume
Platforms
Windows
IATR listing last updated
01 Dec 2014