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This tool is supported wholly or in part by The Human Brain Project.

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Name
Conexus
Byline
Center for Neuroscience, University of California Davis
Description
Conexus is a collection of programs for computational neuroanatomy. It currently contains programs for aligning histologically stained sections to microtome block face images and for taking arbitrary slices through 3D volumes made from these images. The long-term goal is to create a 3D atlas containing detailed connectivity information for the thalamus and cortex of macaque monkeys.
NIfTI-1 support
Creator
Issac Trotts, Bruno Olshausen
Contact
ijtrotts@ucdavis.edu
WWW
http://mallorn.ucdavis.edu/conexus
Availability
public
How to get
Download it from the Conexus web site.
Current version
0.2
Current version release date
August 25, 2004
Open source
Yes
License
GNU General Public License (GPL)
Available free of charge
Yes
Requirements
Conexus depends on GTK, GTS, libpng, libjpg, Python, OpenGL, and Open Inventor. Not all of the programs included with Conexus depend on all of these libraries.
Technical publications
The only available English documentation is the tutorial: http://mallorn.ucdavis.edu/conexus/tutorial.pdf. The freely available source code describes the inner workings of Conexus.
Applications publications
None known.
Other information
Keywords
atlas, HBP supported, registration, segmentation, visualization, volume, warping
Platforms
IATR listing last updated
03 Sep 2004